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Daniel

Jacobson

Dan has led research in academic, corporate, NGO, and national laboratory settings, specializing in computational systems biology. His work focuses on the complex molecular interactions that drive phenotypes and disease, examining how these processes are influenced by environmental conditions. His team applies advanced mathematical, statistical, and computational techniques to biological data, addressing challenges in bioenergy, agriculture, ecosystems, zoonotic spillover, and human health—with a particular focus on their intersections in One Health.A leader in high-performance computing (HPC) for biological research, Dan’s team was the first to break the Exascale barrier, performing the fastest scientific calculation ever recorded at 9.4 Exaops. Their pioneering work in computational biology earned the 2018 Gordon Bell Prize, the first ever awarded for systems biology. His contributions to supercomputing and biology have also been recognized with the Secretary of Energy Honor Award, HPCWire Editor’s Choice for Top HPC-Enabled Scientific Achievement, and multiple honors from Oak Ridge National Laboratory (ORNL), where he has played a key role in pushing the boundaries of computational science.Dan’s research spans multiomics integration, leveraging network theory, topology discovery, wavelet theory, explainable-AI and Large Language Models alongside traditional and advanced supercomputing architectures. His team develops novel parametric, non-parametric, and Bayesian statistical methods, including tools for Genome-Wide Epistasis Studies (GWES), applying them to genomic, transcriptomic, proteomic, metabolomic, microbiomic, and chemiomic datasets. Their goal is to map functional relationships across biosynthetic, signaling, transcriptional, and kinetic regulatory networks in diverse biological systems, from viruses to microbes, plants, and humans.Recently, Dan’s lab has tackled urgent global challenges, including pandemic emergence, investigating viral evolution, pathogenesis, host interactions, environmental drivers of disease outcomes, and predictive models for future pandemics. Through interdisciplinary collaborations, his team continues to advance the intersection of biology and supercomputing, leveraging some of the world’s most powerful computational resources to drive discovery.

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Author

Minisymposium Presentation
Monday, June 16, 2025
12:50
-
13:20
CEST
AI-Driven Systems Biology for Addiction: Large-Scale Multi-Omics Network Modeling and AI Agents for Mechanistic Discovery

Poster

P30 - The MENTOR Interpretation Agent: From Network Embeddings to Mechanistic Narratives via Retrieval-Augmented LLMs

Tuesday, June 27, 2023 19:30
Climate, Weather and Earth Sciences
Chemistry and Materials
Computer Science, Machine Learning, and Applied Mathematics
Applied Social Sciences and Humanities
Engineering
Life Sciences
Physics
With
Anna H.C. Vlot (Oak Ridge National Laboratory); Matthew Lane (Oak Ridge National Laboratory; Bredesen Center for Interdisciplinary Graduate Research and Education, University of Tennessee-Knoxville); Kyle A. Sullivan (Oak Ridge National Laboratory); Peter Kruse (Oak Ridge National Laboratory; Bredesen Center for Interdisciplinary Graduate Research and Education, University of Tennessee-Knoxville); John Dandy and Selin Kaplanoglu (Oak Ridge National Laboratory); Alice Townsend and Jean Merlet (Oak Ridge National Laboratory; Bredesen Center for Interdisciplinary Graduate Research and Education, University of Tennessee-Knoxville); and Daniel A. Jacobson (Oak Ridge National Laboratory)

P07 - A Deep Dive into Deep Learning Frameworks for Protein Structure Prediction: Developing and Evaluating Classes of Biomolecular Complexes

Tuesday, June 27, 2023 19:30
Climate, Weather and Earth Sciences
Chemistry and Materials
Computer Science, Machine Learning, and Applied Mathematics
Applied Social Sciences and Humanities
Engineering
Life Sciences
Physics
With
Verónica G. Melesse Vergara, Érica Texeira Prates, Manesh Shah, and Dan Jacobson (Oak Ridge National Laboratory)

P32 - Multi-Omic Single Cell Network Perturbation for Phenotypic Prediction

Tuesday, June 27, 2023 19:30
Climate, Weather and Earth Sciences
Chemistry and Materials
Computer Science, Machine Learning, and Applied Mathematics
Applied Social Sciences and Humanities
Engineering
Life Sciences
Physics
With
Matthew Lane (Oak Ridge National Laboratory, University of Tennessee); Erica Prates (Oak Ridge National Laboratory); Alice Townsend and Jean Merlet (Oak Ridge National Laboratory, University of Tennessee); Christiane Alvarez and Alana Wells (Oak Ridge National Laboratory); and Daniel Jacobson (Oak Ridge National Laboratory, University of Tennessee)